Information for 17-GAGGAGCGTC (Motif 19)


Reverse Opposite:

p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.962
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets239.8 +/- 130.9bp
Average Position of motif in Background246.8 +/- 115.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.95
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCGTC
-CGGAGC---

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGGAGCGTC
GGGAGGACNG--

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGGAGCGTC
---CAGCC--

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAGGAGCGTC---
NTNNNAGGAGTCTCNTN

MA0056.1_MZF1_1-4/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGGAGCGTC
TGGGGA-----

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGGAGCGTC---
CAAAGGCGTGGCCAG

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAGGAGCGTC-------
--GGNGCGNCTGTTNNN

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GAGGAGCGTC-
ADGGYAGYAGCATCT

MA0090.1_TEAD1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAGGAGCGTC
CNGAGGAATGTG

MA0516.1_SP2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGAGCGTC
GGGNGGGGGCGGGGC