Information for 10-GACGGAGT (Motif 22)


Reverse Opposite:

p-value:1e-12
log p-value:-2.928e+01
Information Content per bp:1.826
Number of Target Sequences with motif2552.0
Percentage of Target Sequences with motif15.03%
Number of Background Sequences with motif4339.3
Percentage of Background Sequences with motif13.11%
Average Position of motif in Targets236.8 +/- 130.9bp
Average Position of motif in Background241.0 +/- 133.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GACGGAGT
--CGGAGC

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GACGGAGT------
NTNNNAGGAGTCTCNTN

PB0131.1_Gmeb1_2/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GACGGAGT---
TGGGCGACGTCGTTAA

PB0179.1_Sp100_2/Jaspar

Match Rank:4
Score:0.58
Offset:-9
Orientation:reverse strand
Alignment:---------GACGGAGT
NNTTTANNCGACGNA--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GACGGAGT
CCAGACAG---

PB0039.1_Klf7_1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GACGGAGT---
NNAGGGGCGGGGTNNA

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GACGGAGT-
AGAGGAAGTG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GACGGAGT
CCAGACRSVB-

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GACGGAGT---
NAGANTGGCGGGGNGNA

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GACGGAGT--
AGGGGGCGGGGCTG