Information for 12-TATGAGTG (Motif 25)


Reverse Opposite:

p-value:1e-11
log p-value:-2.717e+01
Information Content per bp:1.971
Number of Target Sequences with motif408.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif553.0
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets245.2 +/- 128.1bp
Average Position of motif in Background226.8 +/- 149.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TATGAGTG---
-TTGAGTGSTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TATGAGTG---
CTTGAGTGGCT

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TATGAGTG--
-TTAAGTGGA

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TATGAGTG-----
NTTNTATGAATGTGNNC

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TATGAGTG--
CTYRAGTGSY

MA0462.1_BATF::JUN/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TATGAGTG-
GAAATGACTCA

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TATGAGTG---
-TTAAGTGCTT

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TATGAGTG-
NNTNTCATGAATGT

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TATGAGTG
--TGCGTG

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TATGAGTG-----
-NTGATTGACAGN