Information for 19-TGCGGTGT (Motif 30)


Reverse Opposite:

p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.966
Number of Target Sequences with motif163.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif190.8
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets226.1 +/- 138.0bp
Average Position of motif in Background231.6 +/- 143.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TGCGGTGT----
NNNANTGCAGTGCNNTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCGGTGT-
CTGTGGTTTN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGCGGTGT-
NNHTGTGGTTWN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCGGTGT
GCTGTGGTTT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGCGGTGT
NNTGTGGTTT

MA0511.1_RUNX2/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------TGCGGTGT-
GGGGTTTGTGGTTTG

MA0002.2_RUNX1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGCGGTGT
GTCTGTGGTTT

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGCGGTGT--
NNTCCTGCTGTGNNN

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGCGGTGT-------
TNNNNGGTGTCATNTNT

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGCGGTGT--
TNTCCTGCTGTGNNG