| p-value: | 1e-5 |
| log p-value: | -1.325e+01 |
| Information Content per bp: | 1.975 |
| Number of Target Sequences with motif | 12.0 |
| Percentage of Target Sequences with motif | 0.07% |
| Number of Background Sequences with motif | 4.7 |
| Percentage of Background Sequences with motif | 0.01% |
| Average Position of motif in Targets | 230.5 +/- 137.4bp |
| Average Position of motif in Background | 230.0 +/- 123.7bp |
| Strand Bias (log2 ratio + to - strand density) | 3.3 |
| Multiplicity (# of sites on avg that occur together) | 3.67 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer
| Match Rank: | 1 |
| Score: | 0.66
| | Offset: | -5
| | Orientation: | forward strand |
| Alignment: | -----GCTTGGCTGGCT
GTCATGCHTGRCTGS-- |
|
|
|
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer
| Match Rank: | 2 |
| Score: | 0.63
| | Offset: | 2
| | Orientation: | forward strand |
| Alignment: | GCTTGGCTGGCT
--TWGTCTGV-- |
|
|
|
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer
| Match Rank: | 3 |
| Score: | 0.63
| | Offset: | -6
| | Orientation: | reverse strand |
| Alignment: | ------GCTTGGCTGGCT
NGTCACGCTTGGCTGC-- |
|
|
|
MA0014.2_PAX5/Jaspar
| Match Rank: | 4 |
| Score: | 0.63
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----GCTTGGCTGGCT--
GTCACGCTTGGCTGCNCNN |
|
|
|
MA0161.1_NFIC/Jaspar
| Match Rank: | 5 |
| Score: | 0.61
| | Offset: | 2
| | Orientation: | forward strand |
| Alignment: | GCTTGGCTGGCT
--TTGGCA---- |
|
|
|
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer
| Match Rank: | 6 |
| Score: | 0.56
| | Offset: | 2
| | Orientation: | forward strand |
| Alignment: | GCTTGGCTGGCT----
--CTGGCAGNCTGCCA |
|
|
|
SD0002.1_at_AC_acceptor/Jaspar
| Match Rank: | 7 |
| Score: | 0.56
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --GCTTGGCTGGCT
NNACTTGCCTT--- |
|
|
|
POL004.1_CCAAT-box/Jaspar
| Match Rank: | 8 |
| Score: | 0.56
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -GCTTGGCTGGCT
TGATTGGCTANN- |
|
|
|
PB0029.1_Hic1_1/Jaspar
| Match Rank: | 9 |
| Score: | 0.56
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | GCTTGGCTGGCT----
NGTAGGTTGGCATNNN |
|
|
|
POL006.1_BREu/Jaspar
| Match Rank: | 10 |
| Score: | 0.55
| | Offset: | 4
| | Orientation: | reverse strand |
| Alignment: | GCTTGGCTGGCT
----GGCGCGCT |
|
|
|
