Information for 4-GGGACTACCG (Motif 9)


Reverse Opposite:

p-value:1e-25
log p-value:-5.813e+01
Information Content per bp:1.660
Number of Target Sequences with motif1956.0
Percentage of Target Sequences with motif11.52%
Number of Background Sequences with motif3018.0
Percentage of Background Sequences with motif9.12%
Average Position of motif in Targets233.4 +/- 133.8bp
Average Position of motif in Background235.1 +/- 135.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGGACTACCG---
AGGGGGATTAGCTGCC

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGACTACCG-
CGTTGGGGATTAGCCT

PB0156.1_Plagl1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GGGACTACCG---
GCTGGGGGGTACCCCTT

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGACTACCG--
TTAGAGGGATTAACAAT

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGACTACCG--
TTAAGGGGATTAACTAC

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GGGACTACCG---
NNAAGGGATTAACGANT

PH0123.1_Obox3/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGACTACCG--
TGAGGGGGATTAACTAT

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGGACTACCG
GGGAGGACNG

MA0101.1_REL/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGACTACCG
GGGGATTTCC-

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGGACTACCG--
TGAGGGGGATTAACTAT