Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 16974)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 33096)	% of Background Sequences with Motif
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-1.143e+01	0.0029	2855.0	16.82%	5169.6	15.62%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-4	-9.975e+00	0.0061	1498.0	8.82%	2646.6	8.00%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-4	-9.822e+00	0.0061	458.0	2.70%	742.4	2.24%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-8.944e+00	0.0086	10794.0	63.58%	20591.3	62.23%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-3	-6.910e+00	0.0527	7796.0	45.92%	14805.9	44.74%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-2	-6.682e+00	0.0552	174.0	1.02%	267.8	0.81%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.575e+00	0.0552	835.0	4.92%	1468.1	4.44%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-6.549e+00	0.0552	894.0	5.27%	1578.8	4.77%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-5.549e+00	0.1141	1151.0	6.78%	2078.0	6.28%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-4.496e+00	0.2946	1290.0	7.60%	2363.4	7.14%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-4.118e+00	0.3905	291.0	1.71%	499.4	1.51%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-4.094e+00	0.3905	599.0	3.53%	1070.1	3.23%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-4.049e+00	0.3905	33.0	0.19%	43.5	0.13%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-4.021e+00	0.3905	3702.0	21.81%	6997.4	21.15%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.769e+00	0.4061	469.0	2.76%	834.0	2.52%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.691e+00	0.4115	48.0	0.28%	69.6	0.21%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.398e+00	0.5193	3149.0	18.55%	5958.4	18.01%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.260e+00	0.5632	4025.0	23.71%	7655.0	23.13%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.104e+00	0.6235	157.0	0.92%	266.6	0.81%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.770e+00	0.8274	982.0	5.78%	1824.3	5.51%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.731e+00	0.8274	1147.0	6.76%	2140.3	6.47%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.692e+00	0.8274	529.0	3.12%	966.5	2.92%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.642e+00	0.8274	4000.0	23.56%	7639.4	23.09%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.369e+00	1.0000	2810.0	16.55%	5353.0	16.18%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-2.330e+00	1.0000	1610.0	9.48%	3042.7	9.19%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.323e+00	1.0000	1119.0	6.59%	2100.7	6.35%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.321e+00	1.0000	3478.0	20.49%	6647.3	20.09%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.251e+00	1.0000	261.0	1.54%	470.8	1.42%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.229e+00	1.0000	3546.0	20.89%	6784.4	20.50%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.199e+00	1.0000	183.0	1.08%	325.2	0.98%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.174e+00	1.0000	830.0	4.89%	1553.0	4.69%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.093e+00	1.0000	276.0	1.63%	501.7	1.52%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.074e+00	1.0000	2293.0	13.51%	4370.9	13.21%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.049e+00	1.0000	1020.0	6.01%	1920.9	5.80%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.950e+00	1.0000	1078.0	6.35%	2035.1	6.15%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.836e+00	1.0000	2158.0	12.71%	4122.8	12.46%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.811e+00	1.0000	2313.0	13.63%	4423.4	13.37%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.810e+00	1.0000	723.0	4.26%	1359.5	4.11%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.769e+00	1.0000	913.0	5.38%	1725.2	5.21%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.720e+00	1.0000	4264.0	25.12%	8210.1	24.81%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.676e+00	1.0000	3331.0	19.62%	6403.3	19.35%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.626e+00	1.0000	1330.0	7.83%	2534.9	7.66%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.568e+00	1.0000	3143.0	18.51%	6046.8	18.27%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.502e+00	1.0000	3407.0	20.07%	6563.5	19.83%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.497e+00	1.0000	1423.0	8.38%	2720.4	8.22%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.447e+00	1.0000	5021.0	29.58%	9703.0	29.32%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.404e+00	1.0000	1213.0	7.15%	2319.7	7.01%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.330e+00	1.0000	3005.0	17.70%	5796.5	17.52%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.320e+00	1.0000	54.0	0.32%	96.1	0.29%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.319e+00	1.0000	655.0	3.86%	1246.9	3.77%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.302e+00	1.0000	7195.0	42.38%	13948.7	42.15%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.223e+00	1.0000	151.0	0.89%	281.6	0.85%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.164e+00	1.0000	2578.0	15.19%	4980.7	15.05%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.163e+00	1.0000	1165.0	6.86%	2239.7	6.77%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.137e+00	1.0000	148.0	0.87%	277.6	0.84%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.104e+00	1.0000	491.0	2.89%	938.8	2.84%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.091e+00	1.0000	816.0	4.81%	1567.7	4.74%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.077e+00	1.0000	3547.0	20.89%	6871.6	20.77%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.066e+00	1.0000	852.0	5.02%	1638.8	4.95%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.056e+00	1.0000	316.0	1.86%	602.6	1.82%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.022e+00	1.0000	6579.0	38.75%	12779.3	38.62%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.021e+00	1.0000	3280.0	19.32%	6357.8	19.21%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.020e+00	1.0000	989.0	5.83%	1906.9	5.76%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.897e-01	1.0000	65.0	0.38%	121.7	0.37%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.508e-01	1.0000	205.0	1.21%	391.1	1.18%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-9.451e-01	1.0000	151.0	0.89%	287.6	0.87%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-9.416e-01	1.0000	125.0	0.74%	237.2	0.72%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.383e-01	1.0000	7439.0	43.82%	14466.0	43.71%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.257e-01	1.0000	260.0	1.53%	499.0	1.51%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.240e-01	1.0000	2226.0	13.11%	4316.4	13.04%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-8.917e-01	1.0000	2132.0	12.56%	4136.2	12.50%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.896e-01	1.0000	374.0	2.20%	720.4	2.18%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.868e-01	1.0000	2601.0	15.32%	5049.6	15.26%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.609e-01	1.0000	5039.0	29.68%	9799.6	29.61%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.243e-01	1.0000	3059.0	18.02%	5947.0	17.97%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.236e-01	1.0000	283.0	1.67%	546.8	1.65%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-8.229e-01	1.0000	136.0	0.80%	261.5	0.79%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.107e-01	1.0000	5163.0	30.41%	10047.9	30.36%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-8.060e-01	1.0000	4846.0	28.55%	9430.9	28.50%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.937e-01	1.0000	302.0	1.78%	584.6	1.77%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.570e-01	1.0000	3456.0	20.36%	6728.1	20.33%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.094e-01	1.0000	8704.0	51.27%	16963.2	51.26%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.079e-01	1.0000	5854.0	34.48%	11408.6	34.48%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.034e-01	1.0000	1937.0	11.41%	3774.3	11.41%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.347e-01	1.0000	5404.0	31.83%	10542.2	31.86%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.270e-01	1.0000	1180.0	6.95%	2305.6	6.97%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.255e-01	1.0000	2082.0	12.26%	4065.8	12.29%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.235e-01	1.0000	603.0	3.55%	1179.3	3.56%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.190e-01	1.0000	3009.0	17.73%	5874.7	17.75%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.989e-01	1.0000	5958.0	35.10%	11628.8	35.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.728e-01	1.0000	1220.0	7.19%	2388.8	7.22%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.646e-01	1.0000	1172.0	6.90%	2295.9	6.94%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.403e-01	1.0000	845.0	4.98%	1658.6	5.01%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.352e-01	1.0000	40.0	0.24%	81.0	0.24%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-5.241e-01	1.0000	1391.0	8.19%	2727.0	8.24%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.147e-01	1.0000	2452.0	14.44%	4801.7	14.51%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.052e-01	1.0000	2223.0	13.09%	4355.7	13.16%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.951e-01	1.0000	285.0	1.68%	564.8	1.71%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.951e-01	1.0000	285.0	1.68%	564.8	1.71%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.939e-01	1.0000	1239.0	7.30%	2433.5	7.35%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.778e-01	1.0000	879.0	5.18%	1730.6	5.23%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.512e-01	1.0000	446.0	2.63%	883.4	2.67%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.212e-01	1.0000	3845.0	22.65%	7537.7	22.78%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-4.127e-01	1.0000	2480.0	14.61%	4871.2	14.72%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.863e-01	1.0000	4079.0	24.03%	8001.4	24.18%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.852e-01	1.0000	5685.0	33.49%	11137.6	33.66%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-3.801e-01	1.0000	269.0	1.58%	539.8	1.63%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.605e-01	1.0000	702.0	4.14%	1394.6	4.21%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.566e-01	1.0000	12853.0	75.71%	25110.0	75.88%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.426e-01	1.0000	3869.0	22.79%	7600.4	22.97%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-3.307e-01	1.0000	6804.0	40.08%	13334.5	40.30%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.282e-01	1.0000	4618.0	27.20%	9067.4	27.40%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.128e-01	1.0000	565.0	3.33%	1129.2	3.41%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.059e-01	1.0000	430.0	2.53%	863.4	2.61%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.007e-01	1.0000	9217.0	54.29%	18047.9	54.54%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.972e-01	1.0000	590.0	3.48%	1180.5	3.57%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.914e-01	1.0000	2416.0	14.23%	4768.3	14.41%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.903e-01	1.0000	44.0	0.26%	94.7	0.29%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.776e-01	1.0000	8216.0	48.40%	16103.0	48.66%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.766e-01	1.0000	993.0	5.85%	1978.0	5.98%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.763e-01	1.0000	962.0	5.67%	1916.1	5.79%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.653e-01	1.0000	284.0	1.67%	577.6	1.75%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.647e-01	1.0000	661.0	3.89%	1324.2	4.00%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.558e-01	1.0000	1097.0	6.46%	2185.4	6.60%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.423e-01	1.0000	896.0	5.28%	1791.8	5.41%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.350e-01	1.0000	609.0	3.59%	1226.0	3.70%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.318e-01	1.0000	721.0	4.25%	1447.8	4.38%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.234e-01	1.0000	1151.0	6.78%	2297.7	6.94%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.227e-01	1.0000	736.0	4.34%	1478.9	4.47%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.170e-01	1.0000	1787.0	10.53%	3550.6	10.73%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.097e-01	1.0000	869.0	5.12%	1744.0	5.27%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.090e-01	1.0000	5376.0	31.67%	10583.1	31.98%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.078e-01	1.0000	923.0	5.44%	1850.5	5.59%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.966e-01	1.0000	636.0	3.75%	1284.2	3.88%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.961e-01	1.0000	5719.0	33.69%	11258.3	34.02%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.917e-01	1.0000	304.0	1.79%	624.7	1.89%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.840e-01	1.0000	2205.0	12.99%	4380.6	13.24%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.824e-01	1.0000	371.0	2.19%	759.0	2.29%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.809e-01	1.0000	3043.0	17.93%	6026.8	18.21%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.778e-01	1.0000	1841.0	10.84%	3666.3	11.08%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.748e-01	1.0000	10951.0	64.51%	21467.0	64.87%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.638e-01	1.0000	1324.0	7.80%	2651.1	8.01%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.544e-01	1.0000	6357.0	37.45%	12522.2	37.84%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.487e-01	1.0000	2382.0	14.03%	4739.5	14.32%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.396e-01	1.0000	259.0	1.53%	540.2	1.63%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.384e-01	1.0000	1045.0	6.16%	2106.1	6.36%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.376e-01	1.0000	2104.0	12.39%	4196.2	12.68%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.357e-01	1.0000	1864.0	10.98%	3724.5	11.26%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.305e-01	1.0000	1100.0	6.48%	2217.3	6.70%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.280e-01	1.0000	14.0	0.08%	36.1	0.11%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.270e-01	1.0000	7137.0	42.04%	14059.5	42.49%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.247e-01	1.0000	1446.0	8.52%	2903.8	8.77%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.210e-01	1.0000	231.0	1.36%	486.7	1.47%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.195e-01	1.0000	1348.0	7.94%	2711.1	8.19%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.181e-01	1.0000	2309.0	13.60%	4607.2	13.92%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.108e-01	1.0000	6979.0	41.11%	13760.9	41.58%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.087e-01	1.0000	635.0	3.74%	1299.9	3.93%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.024e-01	1.0000	158.0	0.93%	340.6	1.03%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.767e-02	1.0000	2345.0	13.81%	4687.1	14.16%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-9.661e-02	1.0000	1828.0	10.77%	3668.5	11.09%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-9.588e-02	1.0000	851.0	5.01%	1733.0	5.24%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.403e-02	1.0000	5153.0	30.35%	10201.5	30.83%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.010e-02	1.0000	1703.0	10.03%	3424.7	10.35%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.924e-02	1.0000	341.0	2.01%	714.7	2.16%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.043e-02	1.0000	2275.0	13.40%	4558.5	13.78%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.001e-02	1.0000	720.0	4.24%	1477.4	4.46%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.939e-02	1.0000	1469.0	8.65%	2966.8	8.97%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.277e-02	1.0000	2292.0	13.50%	4596.5	13.89%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.166e-02	1.0000	1970.0	11.60%	3961.9	11.97%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-7.091e-02	1.0000	10188.0	60.01%	20044.0	60.57%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.657e-02	1.0000	538.0	3.17%	1117.1	3.38%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.574e-02	1.0000	636.0	3.75%	1314.6	3.97%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.496e-02	1.0000	10249.0	60.37%	20167.8	60.95%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-5.747e-02	1.0000	231.0	1.36%	498.8	1.51%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.679e-02	1.0000	1704.0	10.04%	3445.0	10.41%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.461e-02	1.0000	306.0	1.80%	652.1	1.97%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-4.839e-02	1.0000	79.0	0.47%	184.7	0.56%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-4.708e-02	1.0000	3558.0	20.96%	7110.5	21.49%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-4.529e-02	1.0000	4782.0	28.17%	9516.6	28.76%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.510e-02	1.0000	503.0	2.96%	1055.5	3.19%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.345e-02	1.0000	2570.0	15.14%	5167.6	15.62%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.047e-02	1.0000	676.0	3.98%	1406.0	4.25%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.930e-02	1.0000	142.0	0.84%	319.6	0.97%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.769e-02	1.0000	844.0	4.97%	1745.5	5.27%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.720e-02	1.0000	1424.0	8.39%	2903.1	8.77%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.656e-02	1.0000	648.0	3.82%	1352.8	4.09%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.355e-02	1.0000	2837.0	16.71%	5705.6	17.24%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.146e-02	1.0000	1170.0	6.89%	2402.3	7.26%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.132e-02	1.0000	1917.0	11.29%	3888.2	11.75%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.088e-02	1.0000	2856.0	16.82%	5746.1	17.36%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.546e-02	1.0000	1539.0	9.07%	3144.6	9.50%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.404e-02	1.0000	2336.0	13.76%	4728.6	14.29%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.308e-02	1.0000	560.0	3.30%	1184.3	3.58%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.253e-02	1.0000	191.0	1.13%	428.7	1.30%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.228e-02	1.0000	253.0	1.49%	557.9	1.69%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.112e-02	1.0000	16.0	0.09%	49.1	0.15%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.012e-02	1.0000	198.0	1.17%	444.4	1.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.980e-02	1.0000	1983.0	11.68%	4035.4	12.19%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.853e-02	1.0000	177.0	1.04%	401.5	1.21%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.809e-02	1.0000	536.0	3.16%	1140.3	3.45%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.760e-02	1.0000	113.0	0.67%	266.8	0.81%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.695e-02	1.0000	1448.0	8.53%	2975.9	8.99%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.536e-02	1.0000	92.0	0.54%	222.5	0.67%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.499e-02	1.0000	2895.0	17.05%	5852.8	17.69%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.378e-02	1.0000	1425.0	8.39%	2935.9	8.87%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.320e-02	1.0000	253.0	1.49%	564.7	1.71%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.315e-02	1.0000	28.0	0.16%	80.3	0.24%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.149e-02	1.0000	351.0	2.07%	769.5	2.33%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.952e-03	1.0000	1544.0	9.10%	3182.2	9.62%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.832e-03	1.0000	14097.0	83.04%	27698.8	83.70%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-9.562e-03	1.0000	158.0	0.93%	368.6	1.11%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.874e-03	1.0000	8346.0	49.16%	16569.0	50.07%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.085e-03	1.0000	620.0	3.65%	1326.8	4.01%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.355e-03	1.0000	473.0	2.79%	1027.1	3.10%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-6.877e-03	1.0000	2634.0	15.52%	5363.8	16.21%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.714e-03	1.0000	2622.0	15.45%	5340.5	16.14%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.006e-03	1.0000	2299.0	13.54%	4702.8	14.21%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.969e-03	1.0000	2268.0	13.36%	4653.5	14.06%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.921e-03	1.0000	6177.0	36.39%	12378.3	37.41%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.730e-03	1.0000	1722.0	10.14%	3573.6	10.80%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.142e-03	1.0000	169.0	1.00%	406.0	1.23%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.983e-03	1.0000	2443.0	14.39%	5022.0	15.18%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.527e-03	1.0000	5212.0	30.70%	10508.8	31.76%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.426e-03	1.0000	2329.0	13.72%	4804.6	14.52%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.367e-03	1.0000	1035.0	6.10%	2204.5	6.66%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.366e-03	1.0000	2849.0	16.78%	5841.8	17.65%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.358e-03	1.0000	3021.0	17.80%	6184.0	18.69%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.220e-03	1.0000	3684.0	21.70%	7501.8	22.67%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.074e-03	1.0000	4673.0	27.53%	9459.6	28.59%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.260e-04	1.0000	411.0	2.42%	928.4	2.81%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-8.530e-04	1.0000	3006.0	17.71%	6167.4	18.64%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-5.360e-04	1.0000	4492.0	26.46%	9125.6	27.58%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.360e-04	1.0000	3551.0	20.92%	7263.3	21.95%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.790e-04	1.0000	3510.0	20.68%	7185.4	21.71%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-4.050e-04	1.0000	2505.0	14.76%	5189.1	15.68%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.720e-04	1.0000	1530.0	9.01%	3234.0	9.77%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.430e-04	1.0000	4581.0	26.99%	9315.8	28.15%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.340e-04	1.0000	1989.0	11.72%	4160.1	12.57%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.240e-04	1.0000	3236.0	19.06%	6652.5	20.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.230e-04	1.0000	972.0	5.73%	2103.0	6.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.070e-04	1.0000	2819.0	16.61%	5823.8	17.60%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.180e-04	1.0000	6163.0	36.30%	12464.1	37.67%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.080e-04	1.0000	1606.0	9.46%	3412.1	10.31%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-9.800e-05	1.0000	795.0	4.68%	1757.9	5.31%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-9.700e-05	1.0000	3288.0	19.37%	6788.8	20.52%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.100e-05	1.0000	10182.0	59.98%	20318.8	61.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.300e-05	1.0000	945.0	5.57%	2083.8	6.30%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.300e-05	1.0000	1883.0	11.09%	4003.8	12.10%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.900e-05	1.0000	940.0	5.54%	2081.8	6.29%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.600e-05	1.0000	1250.0	7.36%	2721.7	8.22%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.000e-05	1.0000	5005.0	29.48%	10253.6	30.99%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.000e-06	1.0000	2954.0	17.40%	6190.7	18.71%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.000e-06	1.0000	3984.0	23.47%	8249.3	24.93%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.000e-06	1.0000	270.0	1.59%	681.9	2.06%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.000e-06	1.0000	2852.0	16.80%	5998.6	18.13%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.000e-06	1.0000	10716.0	63.12%	21460.6	64.85%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.000e-06	1.0000	4332.0	25.52%	8981.1	27.14%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-0.000e+00	1.0000	8156.0	48.04%	16528.1	49.95%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-0.000e+00	1.0000	4031.0	23.75%	8437.2	25.50%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	4325.0	25.48%	9034.4	27.30%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-0.000e+00	1.0000	4063.0	23.93%	8550.4	25.84%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	5537.0	32.62%	11481.8	34.70%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	4894.0	28.83%	10210.6	30.86%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	4771.0	28.10%	9972.3	30.14%