Information for 1-GATKRKTCCATT (Motif 1)


Reverse Opposite:

p-value:1e-9
log p-value:-2.229e+01
Information Content per bp:1.890
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif189.2
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets226.4 +/- 133.6bp
Average Position of motif in Background280.3 +/- 207.3bp
Strand Bias (log2 ratio + to - strand density)4.4
Multiplicity (# of sites on avg that occur together)3.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0096.1_Zfp187_1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATKRKTCCATT-
TTATTAGTACATAN

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GATKRKTCCATT-
CTGATTGGTCNATTT

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GATKRKTCCATT
--ATTTTCCATT

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------GATKRKTCCATT
AGAGTGCTGATTGGTCCA--

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GATKRKTCCATT-------
--TGTTCCCATTGTGTACT

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GATKRKTCCATT----
--NNGCACCTTTCTCC

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GATKRKTCCATT--
GNNNATTAATCCCTNCN

Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GATKRKTCCATT--
HWWNNTAATTRGCHAATTAN

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GATKRKTCCATT---
-------YCATTAMC

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GATKRKTCCATT
NNTTTATTGTTCTNNN