Information for 15-AGTGGTACAGAG (Motif 12)


Reverse Opposite:

p-value:1e-3
log p-value:-7.697e+00
Information Content per bp:1.974
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets301.2 +/- 158.1bp
Average Position of motif in Background273.8 +/- 80.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)8.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0096.1_Zfp187_1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGTACAGAG
TTATTAGTACATAN

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGTGGTACAGAG
TGCGGAGTGGGACTGG-

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGTGGTACAGAG-
---GGAACAAAGR

MA0122.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTGGTACAGAG
TTAAGTGGA------

MA0442.1_SOX10/Jaspar

Match Rank:5
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AGTGGTACAGAG
------ACAAAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AGTGGTACAGAG
TTGAGTGSTT-----

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGTGGTACAGAG
CTYRAGTGSY------

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGTACAGAG
NTNNTTAAGTGGNTNAN--

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGTGGTACAGAG
CCAGGAACAG--

MA0032.1_FOXC1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGTGGTACAGAG-
-----TACTNNNN