Information for 23-TTCVAGTCCATT (Motif 20)


Reverse Opposite:

p-value:1e-2
log p-value:-6.000e+00
Information Content per bp:1.836
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif163.7
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets180.2 +/- 135.0bp
Average Position of motif in Background289.6 +/- 305.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0479.1_FOXH1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TTCVAGTCCATT---
----TGTGGATTNNN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTCVAGTCCATT--
--NNTGTGGATTSS

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTCVAGTCCATT-
AANTTCAAGTGGCTTN

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTCVAGTCCATT-
AATTTCAAGTGGCTTN

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTCVAGTCCATT-
AAATTCAAGTGGNTTN

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTCVAGTCCATT-
NANTTTCAAGTGGTTAN

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTCVAGTCCATT-
AATNTTAAGTGGNTNN

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TTCVAGTCCATT--
GGCAAAAGTCCAATAA

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TTCVAGTCCATT
ATTTCCTGTN----

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TTCVAGTCCATT
ACTTCCTGTT----