Information for 4-TTCTGATTGGTG (Motif 3)


Reverse Opposite:

p-value:1e-6
log p-value:-1.441e+01
Information Content per bp:1.781
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif27.78%
Number of Background Sequences with motif370.9
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets253.9 +/- 154.6bp
Average Position of motif in Background285.3 +/- 188.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0060.2_NFYA/Jaspar

Match Rank:1
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----TTCTGATTGGTG--
AGAGTGCTGATTGGTCCA

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TTCTGATTGGTG-----
--CTGATTGGTCNATTT

PH0089.1_Isx/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TTCTGATTGGTG--
ACTCCTAATTAGTCGT

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TTCTGATTGGTG
--CCGATTGGCT

PH0033.1_Gbx1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TTCTGATTGGTG--
TGCCACTAATTAGTGTA

PH0098.1_Lhx8/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTCTGATTGGTG--
CACCGCTAATTAGNNGN

PH0034.1_Gbx2/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTCTGATTGGTG---
AGCGCTAATTAGCGATT

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGATTGGTG---
ANCGCTAATTGGTCTNN

PH0092.1_Lhx2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTCTGATTGGTG--
NNNNNCTAATTAGTTTA

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTCTGATTGGTG--
NNNCGCTAATTAGNNGA