Information for 7-ATHCACAAACCT (Motif 5)


Reverse Opposite:

p-value:1e-5
log p-value:-1.175e+01
Information Content per bp:1.864
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif85.7
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets349.8 +/- 159.7bp
Average Position of motif in Background296.6 +/- 205.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0479.1_FOXH1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATHCACAAACCT
TCCAATCCACA-----

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ATHCACAAACCT
SSAATCCACANN---

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATHCACAAACCT-
AAAGTAAACAAAAATT

MA0084.1_SRY/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATHCACAAACCT
GTAAACAAT---

PB0017.1_Foxj3_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ATHCACAAACCT
AAAAAGTAAACAAACAC

MA0511.1_RUNX2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATHCACAAACCT-
CAAACCACAAACCCC

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ATHCACAAACCT
---AACAAT---

MA0133.1_BRCA1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:ATHCACAAACCT
----ACAACAC-

MA0040.1_Foxq1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ATHCACAAACCT
AATAAACAATN--

MA0090.1_TEAD1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATHCACAAACCT---
---CACATTCCTCCG