Information for 9-RTGTGKAAGRGY (Motif 6)


Reverse Opposite:

p-value:1e-4
log p-value:-1.026e+01
Information Content per bp:1.875
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif19.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets200.2 +/- 46.1bp
Average Position of motif in Background249.4 +/- 231.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0080.3_Spi1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RTGTGKAAGRGY
AAAAAGAGGAAGTGA

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RTGTGKAAGRGY
-AGAGGAAGTG-

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RTGTGKAAGRGY
NNTGTGGATTSS-

MA0598.1_EHF/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RTGTGKAAGRGY
--CAGGAAGG--

MA0130.1_ZNF354C/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RTGTGKAAGRGY
--GTGGAT----

MA0152.1_NFATC2/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:RTGTGKAAGRGY
---TGGAAAA--

MA0472.1_EGR2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--RTGTGKAAGRGY-
GTGCGTGGGCGGGNG

MA0081.1_SPIB/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RTGTGKAAGRGY
-AGAGGAA----

PB0044.1_Mtf1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----RTGTGKAAGRGY
GGGCCGTGTGCAAAAA-

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RTGTGKAAGRGY
AAAGRGGAAGTG-