Information for 4-CATGCATGTG (Motif 7)


Reverse Opposite:

p-value:1e-4
log p-value:-9.837e+00
Information Content per bp:1.944
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif22.22%
Number of Background Sequences with motif471.9
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets373.8 +/- 178.9bp
Average Position of motif in Background275.5 +/- 290.4bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0464.1_Bhlhe40/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CATGCATGTG--
-NTGCACGTGAG

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CATGCATGTG---
NTTNTATGAATGTGNNC

MA0058.2_MAX/Jaspar

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CATGCATGTG---
---CCATGTGCTT

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CATGCATGTG
NNTNTCATGAATGT-

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CATGCATGTG-
-ATGMATATDC

MA0147.2_Myc/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CATGCATGTG---
---CCATGTGCTT

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CATGCATGTG---
---KCACGTGMCN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CATGCATGTG-
AAGGCAAGTGT

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CATGCATGTG--
--KCCACGTGAC

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CATGCATGTG--
--NNCAGGTGNN