Information for 10-ACAGAGTGCCGA (Motif 8)


Reverse Opposite:

p-value:1e-4
log p-value:-9.417e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif29.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets348.0 +/- 19.0bp
Average Position of motif in Background305.2 +/- 238.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ACAGAGTGCCGA
-TTGAGTGSTT-

PB0115.1_Ehf_2/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACAGAGTGCCGA----
TAGTATTTCCGATCTT

MA0496.1_MAFK/Jaspar

Match Rank:3
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:ACAGAGTGCCGA-----
--AAANTGCTGACTNAG

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ACAGAGTGCCGA
ACAAAG------

MA0512.1_Rxra/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACAGAGTGCCGA
-CAAAGGTCAGA

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:ACAGAGTGCCGA-----
-GGGTGTGCCCAAAAGG

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-ACAGAGTGCCGA
CACAGN-------

MA0495.1_MAFF/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:ACAGAGTGCCGA------
NAAAANTGCTGACTCAGC

MA0114.2_HNF4A/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----ACAGAGTGCCGA
NAGNNCAAAGTCCAN-

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:ACAGAGTGCCGA
-TTAAGTGCTT-