Information for 11-TSYGTGTRTATG (Motif 9)


Reverse Opposite:

p-value:1e-4
log p-value:-9.221e+00
Information Content per bp:1.875
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif32.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets198.5 +/- 128.5bp
Average Position of motif in Background194.8 +/- 312.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TSYGTGTRTATG----
ANNNGGATATATCCNNN

PB0016.1_Foxj1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TSYGTGTRTATG--
NNNNTTTGTTTACNNT

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TSYGTGTRTATG-
----TGTTTATTT

MA0479.1_FOXH1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TSYGTGTRTATG---
----TGTGGATTNNN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TSYGTGTRTATG
TTGCGTGCVA---

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TSYGTGTRTATG
TGCGTG------

MA0593.1_FOXP2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TSYGTGTRTATG-
--TNTGTTTACTT

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TSYGTGTRTATG-
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TSYGTGTRTATG-
NNNNNNCTTTTATAN

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TSYGTGTRTATG-
-NYYTGTTTACHN