Information for 5-ACTGCACA (Motif 11)


Reverse Opposite:

p-value:1e-3
log p-value:-7.116e+00
Information Content per bp:1.901
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif2984.2
Percentage of Background Sequences with motif8.24%
Average Position of motif in Targets260.0 +/- 130.4bp
Average Position of motif in Background236.9 +/- 199.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------ACTGCACA---
AATCGCACTGCATTCCG

MA0479.1_FOXH1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACTGCACA
TCCAATCCACA

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTGCACA-------
AGCGGCACACACGCAA

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCACA------
NNTTTGCACACGGCCC

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCACA--
SSAATCCACANN

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ACTGCACA-------
CGAAGCACACAAAATA

PB0026.1_Gm397_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACTGCACA-----
CAGATGTGCACATACGT

MA0102.3_CEBPA/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACTGCACA---
ATTGCACAATA

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACTGCACA-----
TACATGTGCACATAAAA

MA0466.1_CEBPB/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACTGCACA--
TATTGCACAAT