Information for 14-TTCGCAACTG (Motif 12)


Reverse Opposite:

p-value:1e-3
log p-value:-7.097e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets78.0 +/- 0.0bp
Average Position of motif in Background125.3 +/- 133.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTCGCAACTG-----
NNTNCGCACCTGTNGAN

MA0048.1_NHLH1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTCGCAACTG---
-GCGCAGCTGCGT

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTCGCAACTG---
---CCAACTGCCA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTCGCAACTG
SCCTAGCAACAG

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTCGCAACTG
ATTAACACCT-

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTCGCAACTG-
-NNACAGCTGC

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTCGCAACTG
ATTGCGCAAC--

MA0100.2_Myb/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TTCGCAACTG---
---CCAACTGCCA

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTCGCAACTG----
--NVCAGCTGBBNN

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTCGCAACTG------
CTCAGCAGCTGCTACTG