Information for 19-TAGCGTGCATGT (Motif 14)


Reverse Opposite:

p-value:1e-3
log p-value:-7.097e+00
Information Content per bp:1.943
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets233.0 +/- 56.2bp
Average Position of motif in Background139.1 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TAGCGTGCATGT
TTGCGTGCVA--

PH0083.1_Irx3_1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAGCGTGCATGT------
-AAAATACATGTAATACT

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TAGCGTGCATGT----
NTTNTATGAATGTGNNC

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAGCGTGCATGT------
-AATATACATGTAATATA

PH0085.1_Irx4/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TAGCGTGCATGT------
-AATATACATGTAAAACA

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TAGCGTGCATGT-----
ANTNTTACATGTATNTA

MA0464.1_Bhlhe40/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TAGCGTGCATGT---
----NTGCACGTGAG

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TAGCGTGCATGT
NNTNTCATGAATGT

PH0086.1_Irx5/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TAGCGTGCATGT------
-AATATACATGTAAAATT

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TAGCGTGCATGT------
-AAAATACATGTAAAAAT