Information for 9-GTCTGTCT (Motif 17)


Reverse Opposite:

p-value:1e-1
log p-value:-3.859e+00
Information Content per bp:1.797
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif53.33%
Number of Background Sequences with motif9360.0
Percentage of Background Sequences with motif25.84%
Average Position of motif in Targets281.7 +/- 117.9bp
Average Position of motif in Background240.7 +/- 199.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGTCT---
TGTCTGDCACCT

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GTCTGTCT--
--CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GTCTGTCT
VBSYGTCTGG--

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTCTGTCT---
CTGTCTGTCACCT

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GTCTGTCT---
NNTNNTGTCTGGNNTNG

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTCTGTCT-
GGTCTGGCAT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCTGTCT
TWGTCTGV--

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCTGTCT
-GCTGTG-

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTCTGTCT----
ANTCCTTTGTCTNNNN

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GTCTGTCT--
GGNGCGNCTGTTNNN