Information for 8-CTGTTCAATGAT (Motif 2)


Reverse Opposite:

p-value:1e-8
log p-value:-2.055e+01
Information Content per bp:1.947
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets221.2 +/- 144.1bp
Average Position of motif in Background352.8 +/- 148.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGTTCAATGAT---
NANTTCATTGAATTA

PB0197.1_Zfp105_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTTCAATGAT----
ATGGTTCAATAATTTTG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGTTCAATGAT
CTGTTCCTGG--

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGTTCAATGAT----
ACTATGAATGAATGAT

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGTTCAATGAT
-TGATTGATGA-

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CTGTTCAATGAT-
AATCAATTCAATAATT

MA0070.1_PBX1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGTTCAATGAT--
--TTTGATTGATGN

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTGTTCAATGAT--------
---TNNNATGATTTCNNCNN

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGTTCAATGAT------
-NNNNNATTGATGNGTGN

MF0010.1_Homeobox_class/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CTGTTCAATGAT-
------AATAATT