Information for 6-CCATGGATTA (Motif 3)


Reverse Opposite:

p-value:1e-6
log p-value:-1.610e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif22.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets142.3 +/- 105.3bp
Average Position of motif in Background226.9 +/- 145.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CCATGGATTA--
--VRGGATTARN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:CCATGGATTA--
----GGATTAGC

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CCATGGATTA-
---RGGATTAR

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCATGGATTA
--NGGGATTA

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CCATGGATTA--
TTGCCCGGATTAGG

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCATGGATTA------
NNAAGGGATTAACGANT

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCATGGATTA-----
TTAGAGGGATTAACAAT

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCATGGATTA------
TGAAGGGATTAATCATC

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCATGGATTA------
NANAGGGATTAATTATN

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATGGATTA------
TGTAGGGATTAATTGTC