Information for 13-RYGTGTASCATR (Motif 6)


Reverse Opposite:

p-value:1e-3
log p-value:-9.128e+00
Information Content per bp:1.874
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif37.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets263.5 +/- 136.9bp
Average Position of motif in Background247.7 +/- 316.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0059.1_Six6_1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RYGTGTASCATR---
AATAGGGTATCATATAT

PB0154.1_Osr1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---RYGTGTASCATR-
NNNTTAGGTAGCNTNT

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RYGTGTASCATR
GGTAAGTA-----

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RYGTGTASCATR---
GATGGGGTATCATTTTT

PB0155.1_Osr2_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---RYGTGTASCATR-
NNTGTAGGTAGCANNT

MA0157.1_FOXO3/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RYGTGTASCATR
-TGTTTACA---

MA0030.1_FOXF2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RYGTGTASCATR-
NTTGTTTACGTTNN

PH0166.1_Six6_2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--RYGTGTASCATR---
AATAGGGTATCAATATT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:RYGTGTASCATR
--CTGTTCCTGG

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RYGTGTASCATR
TGCGTG-------