Information for 14-CTGACCATAGTG (Motif 8)


Reverse Opposite:

p-value:1e-3
log p-value:-7.790e+00
Information Content per bp:1.906
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets147.2 +/- 83.3bp
Average Position of motif in Background164.4 +/- 112.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)5.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGACCATAGTG
CTGACCTTTG--

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTGACCATAGTG----
GGAGCTGTCCATGGTGCTGA

MA0138.2_REST/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGACCATAGTG-----
GGCGCTGTCCATGGTGCTGAA

MA0512.1_Rxra/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGACCATAGTG
NCTGACCTTTG--

MA0071.1_RORA_1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGACCATAGTG
-TGACCTTGAT-

MA0592.1_ESRRA/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGACCATAGTG
NGTGACCTTGG--

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGACCATAGTG
-TGACCT-----

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGACCATAGTG
NTGACCTTGA--

MA0160.1_NR4A2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTGACCATAGTG
GTGACCTT----

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCATAGTG-
NNNNTGACCTTTNNNN