Information for 15-GTGTGGCTATGA (Motif 9)


Reverse Opposite:

p-value:1e-3
log p-value:-7.790e+00
Information Content per bp:1.971
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets175.0 +/- 114.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)5.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTGTGGCTATGA
CTGTTGCTAGGS

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTGTGGCTATGA
TGGGTGTGGC-----

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTGTGGCTATGA
NTGGGTGTGGCC----

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGGCTATGA--
NNCGTTGCTATGGNN

MA0510.1_RFX5/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGGCTATGA--
NCTGTTGCCAGGGAG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGGCTATGA--
NCCGTTGCTANGNGN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGGCTATGA
NNHTGTGGTTWN--

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GTGTGGCTATGA------
NTNNNNNGTTGCTANGGNNCANA

MA0002.2_RUNX1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGTGGCTATGA
GTCTGTGGTTT---

MA0493.1_Klf1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTGTGGCTATGA
TGGGTGTGGCN----