Information for 7-ACTAGTCA (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.630e+01
Information Content per bp:1.919
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif329.0
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets172.4 +/- 82.9bp
Average Position of motif in Background164.1 +/- 95.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ACTAGTCA-----
GAAAACTAGTTAACATC

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGTCA----
NNAATTAGTCACGGT

PB0108.1_Atf1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGTCA---
NTTATTCGTCATNC

MA0067.1_Pax2/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:ACTAGTCA---
---AGTCACGC

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ACTAGTCA--
----GTCATN

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGTCA------
ANNNCTAGTTAACNGNN

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ACTAGTCA----
AAAGACCTGTCAATCC

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ACTAGTCA----
AATTACCTGTCAATAC

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ACTAGTCA----
AAAGACCTGTCAATAC

MA0491.1_JUND/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACTAGTCA--
NATGAGTCACN