Information for 14-TTGARCGG (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.194e+01
Information Content per bp:1.885
Number of Target Sequences with motif171.0
Percentage of Target Sequences with motif3.87%
Number of Background Sequences with motif1240.7
Percentage of Background Sequences with motif2.73%
Average Position of motif in Targets181.6 +/- 94.9bp
Average Position of motif in Background164.0 +/- 93.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTGARCGG--
CTTGAGTGGCT

PB0197.1_Zfp105_2/Jaspar

Match Rank:2
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------TTGARCGG-
NAAANTTATTGAANCAN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTGARCGG-----
NNNNTGACCCGGCGCG

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTGARCGG-----
NNANTTGACCCCTNNNN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTGARCGG--
TTGAGTGSTT

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTGARCGG-----
NNCNTGACCCCGCTCT

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TTGARCGG----
NNNNGTTGATTGGGTCG

MA0133.1_BRCA1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTGARCGG
GTGTTGN----

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTGARCGG
TGACCTTGACCT-

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TTGARCGG
NTATYGATCH-