Information for 20-TGTATATATR (Motif 21)


Reverse Opposite:

p-value:1e-4
log p-value:-1.148e+01
Information Content per bp:1.770
Number of Target Sequences with motif151.0
Percentage of Target Sequences with motif3.42%
Number of Background Sequences with motif1078.5
Percentage of Background Sequences with motif2.37%
Average Position of motif in Targets162.5 +/- 102.4bp
Average Position of motif in Background155.6 +/- 86.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---TGTATATATR----
ANNNGGATATATCCNNN

PB0198.1_Zfp128_2/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TGTATATATR--
NNTATANATATACN

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TGTATATATR------
-GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:4
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TGTATATATR------
-GTATAAAAGGCGGGG

PB0080.1_Tbp_1/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TGTATATATR----
TCTTTATATATAAATA

MA0033.1_FOXL1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGTATATATR
--TATGTNTA

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGTATATATR
ATGMATATDC-

MA0148.3_FOXA1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGTATATATR--
CAAAGTAAACANNNN

MA0157.1_FOXO3/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTATATATR
TGTAAACA--

PB0019.1_Foxl1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGTATATATR--
NNNTTTGTTTACATTTN