Information for 22-GTGGGGTGCG (Motif 23)


Reverse Opposite:

p-value:1e-4
log p-value:-9.917e+00
Information Content per bp:1.953
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif50.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets162.6 +/- 79.6bp
Average Position of motif in Background148.0 +/- 93.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0595.1_SREBF1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GTGGGGTGCG
GTGGGGTGAT

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTGGGGTGCG--
GTGGCGTGACNG

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTGGGGTGCG
ATGGGGTGAT

MA0596.1_SREBF2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTGGGGTGCG
ATGGGGTGAT

PB0156.1_Plagl1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTGGGGTGCG----
GCTGGGGGGTACCCCTT

PB0100.1_Zfp740_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTGGGGTGCG---
NANNTGGGGGGGGNGN

PB0025.1_Glis2_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GTGGGGTGCG--
NTNTGGGGGGTCNNNA

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTGGGGTGCG---
NNTNAGGGGCGGNNNN

MA0130.1_ZNF354C/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTGGGGTGCG
GTGGAT----

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTGGGGTGCG-----
NNNAAGGGGGCGGGNNN