Information for 24-GGCTTGGCTGGC (Motif 25)


Reverse Opposite:

p-value:1e-2
log p-value:-5.706e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets147.7 +/- 88.0bp
Average Position of motif in Background203.5 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)4.2
Multiplicity (# of sites on avg that occur together)6.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCTGGC
GTCATGCHTGRCTGS-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGCTTGGCTGGC
---TWGTCTGV-

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGCTTGGCTGGC
---TTGGCA---

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCTGGC
CAAAGGCGTGGCCAG-

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGCTTGGCTGGC
NGTCACGCTTGGCTGC-

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCTTGGCTGGC-----
-NGTAGGTTGGCATNNN

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCTTGGCTGGC---
GGNGCGNCTGTTNNN

MA0014.2_PAX5/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGCTTGGCTGGC---
GTCACGCTTGGCTGCNCNN

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCTGGC
AGGGGGATTAGCTGCC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGCTTGGCTGGC
---CTGTCTGG-