Information for 25-TGTGCTAGGTCC (Motif 27)


Reverse Opposite:

p-value:1e-2
log p-value:-4.798e+00
Information Content per bp:1.953
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets141.4 +/- 101.7bp
Average Position of motif in Background241.3 +/- 70.5bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCTAGGTCC
CTGTTCCTGG---

PB0090.1_Zbtb12_1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGTGCTAGGTCC-
CTAAGGTTCTAGATCAC

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TGTGCTAGGTCC
NNNNTTGTGTGCTTNN---

MA0591.1_Bach1::Mafk/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGTGCTAGGTCC----
-NTGCTGAGTCATCCN

Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGTGCTAGGTCC-
AWWNTGCTGAGTCAT

MA0150.2_Nfe2l2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGTGCTAGGTCC-----
--TGCTGAGTCATNNTG

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGTGCTAGGTCC-
-HTGCTGAGTCAT

NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGTGCTAGGTCC--
--TGCTGAGTCATC

MA0501.1_NFE2::MAF/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTGCTAGGTCC-
AAANTGCTGAGTCAT

MA0138.2_REST/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCTAGGTCC----
GGCGCTGTCCATGGTGCTGAA