Information for 17-CTCGGTAC (Motif 28)


Reverse Opposite:

p-value:1e-1
log p-value:-3.246e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif46.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets174.7 +/- 93.9bp
Average Position of motif in Background178.8 +/- 98.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0138.1_Irf4_2/Jaspar

Match Rank:1
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CTCGGTAC-
AGTATTCTCGGTTGC

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CTCGGTAC-
NNAATTCTCGNTNAN

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CTCGGTAC-
ACCACTCTCGGTCAC

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTCGGTAC---
TACCCTAGTTACCGA

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CTCGGTAC-----
-----TACTNNNN

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTCGGTAC-------
TTCNAAGTACTTNNNNN

PB0094.1_Zfp128_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGTAC--------
TTNGGGTACGCCNNANN

PB0115.1_Ehf_2/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTCGGTAC-----
AAGATCGGAANTNNNA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTCGGTAC--
CCAGGAACAG

PB0156.1_Plagl1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGTAC--------
NNNNGGTACCCCCCANN