Information for 9-GATGATTCCGTT (Motif 3)


Reverse Opposite:

p-value:1e-19
log p-value:-4.410e+01
Information Content per bp:1.608
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif43.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets156.6 +/- 84.9bp
Average Position of motif in Background159.3 +/- 85.5bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0468.1_DUX4/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GATGATTCCGTT-
--TGATTAAATTA

MA0476.1_FOS/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GATGATTCCGTT
NATGAGTCANN-

MA0491.1_JUND/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GATGATTCCGTT
NATGAGTCACN-

MA0478.1_FOSL2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GATGATTCCGTT
GGATGACTCAT--

MA0490.1_JUNB/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GATGATTCCGTT
GGATGACTCAT--

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GATGATTCCGTT
GATGAGTCAT--

Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATGATTCCGTT
NDATGASTCATH-

Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATGATTCCGTT
NNATGAGTCATN-

PH0037.1_Hdx/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GATGATTCCGTT--
TNNNATGATTTCNNCNN

MA0489.1_JUN_(var.2)/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GATGATTCCGTT
AGGAGATGACTCAT--