Information for 2-AACGAACG (Motif 9)


Reverse Opposite:

p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.787
Number of Target Sequences with motif128.0
Percentage of Target Sequences with motif2.90%
Number of Background Sequences with motif735.7
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets162.2 +/- 96.2bp
Average Position of motif in Background157.3 +/- 93.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AACGAACG-
AGAAACGAAAGT

POL007.1_BREd/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AACGAACG
NANANAC-

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AACGAACG----
AGAAGAACAAAGGACTA

MA0514.1_Sox3/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AACGAACG
AAAACAAAGG

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AACGAACG----
ATAAGAACAAAGGACTA

MA0143.3_Sox2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AACGAACG
AACAAAGG

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AACGAACG-
AAAAATAACAAACGG

MA0041.1_Foxd3/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AACGAACG---
AAACAAACATTC

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AACGAACG-
GAACAATGGN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AACGAACG
RNAACAATGG