Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4420)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45464)	% of Background Sequences with Motif
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-8.298e+00	0.0657	792.0	17.92%	7256.0	15.96%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-6.912e+00	0.1314	72.0	1.63%	501.6	1.10%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-5.645e+00	0.3109	1482.0	33.53%	14377.4	31.63%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-5.493e+00	0.3109	488.0	11.04%	4468.0	9.83%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-5.364e+00	0.3109	101.0	2.29%	792.9	1.74%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-5.196e+00	0.3109	135.0	3.05%	1107.3	2.44%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-2	-5.161e+00	0.3109	63.0	1.43%	461.3	1.01%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-4.325e+00	0.4368	141.0	3.19%	1196.9	2.63%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-4.273e+00	0.4368	733.0	16.58%	6987.4	15.37%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.266e+00	0.4368	249.0	5.63%	2226.0	4.90%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.992e+00	0.4430	376.0	8.51%	3478.4	7.65%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-1	-3.964e+00	0.4430	239.0	5.41%	2147.7	4.72%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.884e+00	0.4430	960.0	21.72%	9302.0	20.46%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.713e+00	0.4601	57.0	1.29%	444.9	0.98%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.433e+00	0.5682	412.0	9.32%	3876.4	8.53%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-3.369e+00	0.5682	145.0	3.28%	1277.4	2.81%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.280e+00	0.5841	90.0	2.04%	761.7	1.68%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.225e+00	0.5841	2098.0	47.47%	20975.6	46.14%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.944e+00	0.7315	181.0	4.10%	1647.1	3.62%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.933e+00	0.7315	1713.0	38.76%	17078.3	37.57%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-2.932e+00	0.7315	339.0	7.67%	3197.2	7.03%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.854e+00	0.7315	202.0	4.57%	1857.9	4.09%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.845e+00	0.7315	390.0	8.82%	3710.6	8.16%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.759e+00	0.7315	232.0	5.25%	2157.3	4.75%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.538e+00	0.8346	3083.0	69.75%	31257.5	68.76%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-2.455e+00	0.8719	96.0	2.17%	854.5	1.88%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.441e+00	0.8719	37.0	0.84%	299.1	0.66%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.440e+00	0.8719	746.0	16.88%	7325.3	16.11%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.372e+00	0.8719	82.0	1.86%	724.1	1.59%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.231e+00	0.9451	169.0	3.82%	1577.1	3.47%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.215e+00	0.9451	63.0	1.43%	550.7	1.21%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.155e+00	0.9564	646.0	14.62%	6355.9	13.98%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.118e+00	0.9623	220.0	4.98%	2089.5	4.60%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.055e+00	0.9943	202.0	4.57%	1916.5	4.22%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.015e+00	1.0000	2098.0	47.47%	21194.2	46.62%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.990e+00	1.0000	107.0	2.42%	986.8	2.17%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.956e+00	1.0000	575.0	13.01%	5666.1	12.46%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.882e+00	1.0000	53.0	1.20%	469.1	1.03%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.858e+00	1.0000	125.0	2.83%	1171.1	2.58%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.821e+00	1.0000	122.0	2.76%	1144.1	2.52%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.814e+00	1.0000	199.0	4.50%	1907.7	4.20%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.759e+00	1.0000	433.0	9.80%	4260.8	9.37%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.731e+00	1.0000	248.0	5.61%	2404.2	5.29%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.665e+00	1.0000	847.0	19.16%	8472.1	18.64%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.661e+00	1.0000	85.0	1.92%	791.7	1.74%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.648e+00	1.0000	976.0	22.08%	9789.2	21.53%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.609e+00	1.0000	127.0	2.87%	1210.0	2.66%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.560e+00	1.0000	2216.0	50.14%	22511.3	49.52%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.421e+00	1.0000	696.0	15.75%	6981.8	15.36%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.397e+00	1.0000	1044.0	23.62%	10536.7	23.18%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.395e+00	1.0000	541.0	12.24%	5409.3	11.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.352e+00	1.0000	613.0	13.87%	6150.0	13.53%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.336e+00	1.0000	1008.0	22.81%	10182.8	22.40%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.332e+00	1.0000	126.0	2.85%	1222.1	2.69%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.308e+00	1.0000	617.0	13.96%	6199.0	13.64%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.278e+00	1.0000	22.0	0.50%	196.7	0.43%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.248e+00	1.0000	169.0	3.82%	1662.1	3.66%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.235e+00	1.0000	716.0	16.20%	7222.4	15.89%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.215e+00	1.0000	149.0	3.37%	1464.0	3.22%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.212e+00	1.0000	99.0	2.24%	962.6	2.12%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.140e+00	1.0000	23.0	0.52%	211.4	0.46%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.129e+00	1.0000	1075.0	24.32%	10918.3	24.02%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.128e+00	1.0000	183.0	4.14%	1817.2	4.00%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.107e+00	1.0000	179.0	4.05%	1779.6	3.91%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.095e+00	1.0000	40.0	0.90%	381.1	0.84%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.085e+00	1.0000	141.0	3.19%	1397.8	3.07%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.064e+00	1.0000	162.0	3.67%	1612.3	3.55%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.061e+00	1.0000	276.0	6.24%	2770.9	6.10%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.034e+00	1.0000	323.0	7.31%	3253.2	7.16%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.027e+00	1.0000	338.0	7.65%	3407.6	7.50%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.014e+00	1.0000	321.0	7.26%	3236.1	7.12%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.001e+00	1.0000	320.0	7.24%	3228.2	7.10%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.445e-01	1.0000	335.0	7.58%	3392.0	7.46%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.328e-01	1.0000	64.0	1.45%	633.5	1.39%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.318e-01	1.0000	315.0	7.13%	3190.0	7.02%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-9.307e-01	1.0000	53.0	1.20%	522.9	1.15%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.209e-01	1.0000	827.0	18.71%	8433.1	18.55%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-9.207e-01	1.0000	174.0	3.94%	1752.8	3.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.989e-01	1.0000	1515.0	34.28%	15501.8	34.10%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.872e-01	1.0000	1026.0	23.21%	10484.0	23.06%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.828e-01	1.0000	230.0	5.20%	2330.0	5.13%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-8.692e-01	1.0000	452.0	10.23%	4603.5	10.13%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.650e-01	1.0000	38.0	0.86%	376.0	0.83%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-8.573e-01	1.0000	490.0	11.09%	4995.2	10.99%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.527e-01	1.0000	433.0	9.80%	4413.0	9.71%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.438e-01	1.0000	545.0	12.33%	5562.6	12.24%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.244e-01	1.0000	677.0	15.32%	6921.5	15.23%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.064e-01	1.0000	1153.0	26.09%	11814.2	25.99%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.679e-01	1.0000	44.0	1.00%	443.1	0.97%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.378e-01	1.0000	133.0	3.01%	1358.5	2.99%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.191e-01	1.0000	52.0	1.18%	529.9	1.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.176e-01	1.0000	3.0	0.07%	27.9	0.06%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.058e-01	1.0000	353.0	7.99%	3624.6	7.97%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.895e-01	1.0000	1168.0	26.43%	12010.4	26.42%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.725e-01	1.0000	606.0	13.71%	6235.1	13.72%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.633e-01	1.0000	117.0	2.65%	1204.8	2.65%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.428e-01	1.0000	70.0	1.58%	722.3	1.59%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.263e-01	1.0000	22.0	0.50%	227.7	0.50%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-6.254e-01	1.0000	245.0	5.54%	2530.3	5.57%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.183e-01	1.0000	977.0	22.10%	10072.6	22.16%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.159e-01	1.0000	207.0	4.68%	2140.1	4.71%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.108e-01	1.0000	106.0	2.40%	1098.8	2.42%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-6.097e-01	1.0000	804.0	18.19%	8294.3	18.24%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.949e-01	1.0000	158.0	3.57%	1638.1	3.60%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.920e-01	1.0000	517.0	11.70%	5343.8	11.75%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.732e-01	1.0000	1044.0	23.62%	10780.3	23.71%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.726e-01	1.0000	746.0	16.88%	7710.5	16.96%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-5.644e-01	1.0000	665.0	15.05%	6878.9	15.13%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.599e-01	1.0000	1985.0	44.91%	20472.1	45.03%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.436e-01	1.0000	306.0	6.92%	3179.7	6.99%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.433e-01	1.0000	600.0	13.57%	6215.6	13.67%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.426e-01	1.0000	377.0	8.53%	3913.2	8.61%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.368e-01	1.0000	399.0	9.03%	4143.0	9.11%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.980e-01	1.0000	731.0	16.54%	7584.1	16.68%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.918e-01	1.0000	1003.0	22.69%	10393.7	22.86%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.908e-01	1.0000	55.0	1.24%	584.4	1.29%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.893e-01	1.0000	882.0	19.95%	9146.1	20.12%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.847e-01	1.0000	1079.0	24.41%	11180.3	24.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.836e-01	1.0000	267.0	6.04%	2791.8	6.14%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.830e-01	1.0000	92.0	2.08%	972.3	2.14%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.783e-01	1.0000	553.0	12.51%	5753.2	12.66%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.697e-01	1.0000	236.0	5.34%	2473.1	5.44%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.581e-01	1.0000	389.0	8.80%	4063.5	8.94%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-4.564e-01	1.0000	43.0	0.97%	462.1	1.02%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-4.553e-01	1.0000	260.0	5.88%	2726.5	6.00%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.437e-01	1.0000	395.0	8.94%	4130.3	9.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.381e-01	1.0000	281.0	6.36%	2949.4	6.49%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.342e-01	1.0000	1142.0	25.84%	11855.0	26.08%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.327e-01	1.0000	85.0	1.92%	908.0	2.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.321e-01	1.0000	5.0	0.11%	57.6	0.13%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.201e-01	1.0000	1732.0	39.19%	17944.5	39.47%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.187e-01	1.0000	141.0	3.19%	1496.2	3.29%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.181e-01	1.0000	25.0	0.57%	275.5	0.61%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.179e-01	1.0000	771.0	17.44%	8032.9	17.67%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.154e-01	1.0000	330.0	7.47%	3466.0	7.62%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.082e-01	1.0000	192.0	4.34%	2031.2	4.47%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.051e-01	1.0000	1622.0	36.70%	16820.9	37.00%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-4.034e-01	1.0000	379.0	8.57%	3978.6	8.75%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.936e-01	1.0000	601.0	13.60%	6284.3	13.82%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.881e-01	1.0000	47.0	1.06%	513.9	1.13%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.870e-01	1.0000	120.0	2.71%	1283.2	2.82%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.824e-01	1.0000	808.0	18.28%	8432.4	18.55%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.818e-01	1.0000	85.0	1.92%	916.0	2.01%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.813e-01	1.0000	256.0	5.79%	2706.2	5.95%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.806e-01	1.0000	517.0	11.70%	5419.1	11.92%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.758e-01	1.0000	62.0	1.40%	674.5	1.48%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-3.714e-01	1.0000	914.0	20.68%	9534.4	20.97%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.679e-01	1.0000	404.0	9.14%	4251.6	9.35%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.658e-01	1.0000	202.0	4.57%	2147.8	4.72%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.573e-01	1.0000	301.0	6.81%	3183.3	7.00%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.570e-01	1.0000	315.0	7.13%	3329.9	7.32%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.544e-01	1.0000	1371.0	31.02%	14264.8	31.38%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.465e-01	1.0000	165.0	3.73%	1765.9	3.88%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.460e-01	1.0000	44.0	1.00%	487.2	1.07%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-3.458e-01	1.0000	28.0	0.63%	316.0	0.70%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-3.401e-01	1.0000	62.0	1.40%	680.6	1.50%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.302e-01	1.0000	755.0	17.08%	7911.2	17.40%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.254e-01	1.0000	355.0	8.03%	3758.8	8.27%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.222e-01	1.0000	431.0	9.75%	4552.0	10.01%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.208e-01	1.0000	54.0	1.22%	598.5	1.32%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.139e-01	1.0000	1057.0	23.91%	11047.9	24.30%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.087e-01	1.0000	23.0	0.52%	265.4	0.58%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.070e-01	1.0000	436.0	9.86%	4610.8	10.14%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-3.063e-01	1.0000	369.0	8.35%	3912.6	8.61%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.048e-01	1.0000	557.0	12.60%	5870.8	12.91%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.031e-01	1.0000	382.0	8.64%	4049.3	8.91%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-2.959e-01	1.0000	1246.0	28.19%	13013.0	28.62%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.902e-01	1.0000	863.0	19.52%	9054.6	19.92%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.843e-01	1.0000	1323.0	29.93%	13817.3	30.39%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.833e-01	1.0000	118.0	2.67%	1287.0	2.83%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.815e-01	1.0000	362.0	8.19%	3850.2	8.47%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.798e-01	1.0000	471.0	10.66%	4988.6	10.97%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.780e-01	1.0000	90.0	2.04%	991.8	2.18%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.771e-01	1.0000	463.0	10.48%	4906.2	10.79%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.704e-01	1.0000	366.0	8.28%	3897.8	8.57%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.640e-01	1.0000	851.0	19.25%	8948.0	19.68%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.426e-01	1.0000	149.0	3.37%	1628.4	3.58%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.359e-01	1.0000	611.0	13.82%	6472.4	14.24%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.331e-01	1.0000	271.0	6.13%	2919.1	6.42%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.308e-01	1.0000	157.0	3.55%	1717.5	3.78%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.294e-01	1.0000	192.0	4.34%	2088.3	4.59%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.279e-01	1.0000	1187.0	26.86%	12456.4	27.40%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.104e-01	1.0000	236.0	5.34%	2561.5	5.63%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.018e-01	1.0000	102.0	2.31%	1141.7	2.51%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.894e-01	1.0000	372.0	8.42%	4004.3	8.81%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.819e-01	1.0000	1043.0	23.60%	11006.5	24.21%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.798e-01	1.0000	205.0	4.64%	2248.6	4.95%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.759e-01	1.0000	529.0	11.97%	5659.5	12.45%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.728e-01	1.0000	25.0	0.57%	308.5	0.68%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.700e-01	1.0000	338.0	7.65%	3659.9	8.05%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.677e-01	1.0000	16.0	0.36%	206.7	0.45%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.675e-01	1.0000	933.0	21.11%	9878.8	21.73%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.626e-01	1.0000	851.0	19.25%	9030.6	19.86%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.593e-01	1.0000	100.0	2.26%	1135.7	2.50%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.441e-01	1.0000	96.0	2.17%	1098.8	2.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.286e-01	1.0000	569.0	12.87%	6120.7	13.46%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.270e-01	1.0000	545.0	12.33%	5870.4	12.91%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.179e-01	1.0000	560.0	12.67%	6037.3	13.28%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.158e-01	1.0000	426.0	9.64%	4630.5	10.19%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.137e-01	1.0000	253.0	5.72%	2801.0	6.16%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.127e-01	1.0000	12.0	0.27%	169.4	0.37%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.101e-01	1.0000	4.0	0.09%	68.1	0.15%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.097e-01	1.0000	20.0	0.45%	265.3	0.58%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.060e-01	1.0000	81.0	1.83%	952.4	2.09%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.023e-01	1.0000	2603.0	58.89%	27202.7	59.84%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.956e-02	1.0000	211.0	4.77%	2363.5	5.20%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.956e-02	1.0000	464.0	10.50%	5048.7	11.11%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.791e-02	1.0000	127.0	2.87%	1459.4	3.21%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.788e-02	1.0000	198.0	4.48%	2225.3	4.89%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.610e-02	1.0000	180.0	4.07%	2033.5	4.47%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-9.253e-02	1.0000	27.0	0.61%	352.8	0.78%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-8.971e-02	1.0000	510.0	11.54%	5545.7	12.20%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-8.444e-02	1.0000	486.0	11.00%	5299.9	11.66%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.209e-02	1.0000	1578.0	35.70%	16691.0	36.72%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-8.136e-02	1.0000	245.0	5.54%	2744.2	6.04%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.117e-02	1.0000	529.0	11.97%	5757.5	12.66%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.131e-02	1.0000	186.0	4.21%	2120.7	4.66%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.111e-02	1.0000	114.0	2.58%	1337.6	2.94%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.948e-02	1.0000	2005.0	45.36%	21127.4	46.47%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.742e-02	1.0000	512.0	11.58%	5599.8	12.32%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.710e-02	1.0000	599.0	13.55%	6517.9	14.34%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.636e-02	1.0000	825.0	18.67%	8891.7	19.56%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.459e-02	1.0000	24.0	0.54%	328.5	0.72%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.141e-02	1.0000	165.0	3.73%	1903.7	4.19%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.991e-02	1.0000	395.0	8.94%	4372.0	9.62%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.732e-02	1.0000	1332.0	30.14%	14198.9	31.23%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.708e-02	1.0000	143.0	3.24%	1668.3	3.67%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.629e-02	1.0000	141.0	3.19%	1647.5	3.62%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.431e-02	1.0000	258.0	5.84%	2917.5	6.42%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.382e-02	1.0000	1242.0	28.10%	13272.2	29.19%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.124e-02	1.0000	35.0	0.79%	465.2	1.02%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.124e-02	1.0000	35.0	0.79%	465.2	1.02%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.907e-02	1.0000	559.0	12.65%	6131.9	13.49%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-4.750e-02	1.0000	26.0	0.59%	361.6	0.80%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.396e-02	1.0000	518.0	11.72%	5709.5	12.56%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.702e-02	1.0000	129.0	2.92%	1540.2	3.39%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.593e-02	1.0000	4.0	0.09%	85.9	0.19%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.332e-02	1.0000	24.0	0.54%	347.3	0.76%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.964e-02	1.0000	41.0	0.93%	554.9	1.22%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.948e-02	1.0000	403.0	9.12%	4524.3	9.95%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.760e-02	1.0000	811.0	18.35%	8854.8	19.48%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.749e-02	1.0000	53.0	1.20%	697.6	1.53%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.607e-02	1.0000	146.0	3.30%	1748.8	3.85%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.582e-02	1.0000	3.0	0.07%	74.9	0.16%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.270e-02	1.0000	261.0	5.90%	3016.1	6.63%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.006e-02	1.0000	521.0	11.79%	5819.6	12.80%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.986e-02	1.0000	136.0	3.08%	1652.1	3.63%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.724e-02	1.0000	434.0	9.82%	4903.0	10.79%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.637e-02	1.0000	826.0	18.69%	9071.8	19.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.480e-02	1.0000	23.0	0.52%	356.2	0.78%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.340e-02	1.0000	52.0	1.18%	711.1	1.56%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.268e-02	1.0000	401.0	9.07%	4574.4	10.06%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.249e-02	1.0000	173.0	3.91%	2089.3	4.60%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.108e-02	1.0000	2223.0	50.29%	23641.0	52.00%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.101e-02	1.0000	582.0	13.17%	6525.7	14.35%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.165e-03	1.0000	84.0	1.90%	1099.2	2.42%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.565e-03	1.0000	25.0	0.57%	396.0	0.87%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.471e-03	1.0000	391.0	8.85%	4530.6	9.97%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.269e-03	1.0000	94.0	2.13%	1237.3	2.72%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.448e-03	1.0000	181.0	4.10%	2247.1	4.94%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.578e-03	1.0000	510.0	11.54%	5873.8	12.92%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-8.700e-04	1.0000	4.0	0.09%	136.9	0.30%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-8.620e-04	1.0000	944.0	21.36%	10602.8	23.32%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.060e-04	1.0000	27.0	0.61%	519.6	1.14%