Information for 9-AGACATAG (Motif 10)


Reverse Opposite:

p-value:1e-5
log p-value:-1.286e+01
Information Content per bp:1.814
Number of Target Sequences with motif164.0
Percentage of Target Sequences with motif12.59%
Number of Background Sequences with motif4238.7
Percentage of Background Sequences with motif8.78%
Average Position of motif in Targets195.3 +/- 103.5bp
Average Position of motif in Background186.9 +/- 110.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGACATAG
CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGACATAG
CCAGACAG--

MA0033.1_FOXL1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGACATAG
TATACATA-

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------AGACATAG--
CAAATCCAGACATCACA

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGACATAG----
AAACAGACAAAGGAAT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACATAG
BCAGACWA--

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGACATAG-
AAAACAAAGG

MA0124.1_NKX3-1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGACATAG
ATACTTA-

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------AGACATAG
AGGTGHCAGACA---

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGACATAG
TGACGT--