Information for 13-CTGTCTCTGT (Motif 11)


Reverse Opposite:

p-value:1e-5
log p-value:-1.245e+01
Information Content per bp:1.958
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif299.7
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets190.7 +/- 115.0bp
Average Position of motif in Background191.3 +/- 110.8bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.54
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTCTGT---
AGCTGTCACTCACCT

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCTGT-
ACTTTCACTTTC

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCTGT
GCTGTG-----

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------CTGTCTCTGT-
NNNCAGCTGTCAATATN

MA0508.1_PRDM1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGTCTCTGT--
TCACTTTCACTTTCN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGTCTCTGT
CTGTCTGG--

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTCTGT---
ACCACTCTCGGTCAC

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTGTCTCTGT
AAGCACCTGTCAATAT

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTGTCTCTGT
----CTTTGT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGTCTCTGT
CTGTTCCTGG