Information for 14-TGATGATGAT (Motif 12)


Reverse Opposite:

p-value:1e-5
log p-value:-1.241e+01
Information Content per bp:1.708
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif7.98%
Number of Background Sequences with motif2431.1
Percentage of Background Sequences with motif5.04%
Average Position of motif in Targets185.5 +/- 107.8bp
Average Position of motif in Background191.8 +/- 125.3bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGATGATGAT----
NAGATWNBNATCTNN

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGATGATGAT-----
TAATGATGATCACTA

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGATGATGAT
AGATAASR--

PB0022.1_Gata5_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGATGATGAT--
TAAACTGATAAGAAGAT

PB0023.1_Gata6_1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGATGATGAT--
TATAGAGATAAGAATTG

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGATGATGAT-----
AGATGCTRCTRCCHT

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGATGATGAT
AGGTGTTAAT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGATGATGAT
-GKTAATGR-

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGATGATGAT
NBWGATAAGR--

MA0036.2_GATA2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGATGATGAT--
NCAGATAAGAANNN