Information for 20-GGCTTGGCTRKC (Motif 17)


Reverse Opposite:

p-value:1e-4
log p-value:-9.395e+00
Information Content per bp:1.928
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets232.2 +/- 93.4bp
Average Position of motif in Background185.0 +/- 74.0bp
Strand Bias (log2 ratio + to - strand density)4.2
Multiplicity (# of sites on avg that occur together)6.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGCTTGGCTRKC
---TTGGCA---

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCTRKC
CAAAGGCGTGGCCAG-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGCTTGGCTRKC
---TWGTCTGV-

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCTRKC
GTCATGCHTGRCTGS-

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCTTGGCTRKC---
GGNGCGNCTGTTNNN

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCTRKC
AGGGGGATTAGCTGCC

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCTTGGCTRKC
--CTTGGCAA--

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGCTTGGCTRKC
DGGGYGKGGC----

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCTTGGCTRKC
TGATTGGCTANN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTGGCTRKC
NNACTTGCCTT--