Information for 13-GKGCGATT (Motif 19)


Reverse Opposite:

p-value:1e-3
log p-value:-9.002e+00
Information Content per bp:1.925
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif373.7
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets156.5 +/- 121.7bp
Average Position of motif in Background198.0 +/- 112.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GKGCGATT--
CNGTGATTTN

PH0122.1_Obox2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GKGCGATT------
TGAGGGGGATTAACTAT

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GKGCGATT------
TGAGGGGGATTAACTAT

PB0143.1_Klf7_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GKGCGATT----
NNNTNGGGCGTATNNTN

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GKGCGATT-------
AGGGGGATTAGCTGCC

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GKGCGATT-
-GGCVGTTR

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GKGCGATT------
TTAAGGGGATTAACTAC

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GKGCGATT------
TTAGAGGGATTAACAAT

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GKGCGATT--
--RGGATTAR

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GKGCGATT---
-GGCCATTAAC