Information for 4-ATTCGATGAT (Motif 2)


Reverse Opposite:

p-value:1e-26
log p-value:-6.119e+01
Information Content per bp:1.861
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets199.6 +/- 107.1bp
Average Position of motif in Background220.6 +/- 128.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.82
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0014.1_Cphx/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTCGATGAT
NTTGATTNNATCAN

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ATTCGATGAT
----CATGAC

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATTCGATGAT
YTAATYNRATTA-

PH0044.1_Homez/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----ATTCGATGAT--
NNTAAAAACGATGTTNT

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATTCGATGAT--------
-TNNNATGATTTCNNCNN

PB0005.1_Bbx_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATTCGATGAT---
TAATTCAATGAAGTG

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATTCGATGAT
TAATCHGATTAC

PH0017.1_Cux1_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATTCGATGAT-----
TAATGATGATCACTA

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----ATTCGATGAT-
AATCAATTCAATAATT

MA0596.1_SREBF2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATTCGATGAT
ATGGGGTGAT