Information for 22-GTCTTACACGCG (Motif 20)


Reverse Opposite:

p-value:1e-3
log p-value:-7.936e+00
Information Content per bp:1.957
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets194.5 +/- 113.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)9.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTACACGCG
TGTCTGDCACCT-

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTCTTACACGCG
CTGTCTGTCACCT-

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GTCTTACACGCG
------CACGCA

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTCTTACACGCG----
NNTTTGCACACGGCCC

PB0147.1_Max_2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTCTTACACGCG----
--GTGCCACGCGACTG

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GTCTTACACGCG--------
ACCGCCNTCCACGTGTANNGACA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GTCTTACACGCG-
---TBGCACGCAA

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GTCTTACACGCG
----TACTNNNN

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GTCTTACACGCG--
------CACGTGGN

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GTCTTACACGCG
------CACGTG