Information for 18-CTGTTCCA (Motif 23)


Reverse Opposite:

p-value:1e-2
log p-value:-5.115e+00
Information Content per bp:1.912
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif10.51%
Number of Background Sequences with motif4095.8
Percentage of Background Sequences with motif8.48%
Average Position of motif in Targets189.4 +/- 112.1bp
Average Position of motif in Background189.4 +/- 112.2bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CTGTTCCA--
CTGTTCCTGG

MA0152.1_NFATC2/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CTGTTCCA
-TTTTCCA

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTTCCA
GCTGTG---

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGTTCCA
CNGTCCTCCC

MA0007.2_AR/Jaspar

Match Rank:5
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------CTGTTCCA
GNACANNNTGTTCTT

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGTTCCA--
ATTTTCCATT

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGTTCCA-
NATGTTGCAA

MA0499.1_Myod1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTGTTCCA
TGCAGCTGTCCCT

PB0047.1_Myf6_1/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------CTGTTCCA-
CNGACACCTGTTCNNN

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTGTTCCA
--GCTCCG