Information for 6-GATKATTCCA (Motif 3)


Reverse Opposite:

p-value:1e-17
log p-value:-4.050e+01
Information Content per bp:1.902
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif31.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets200.7 +/- 105.1bp
Average Position of motif in Background237.4 +/- 88.2bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GATKATTCCA--
--GCATTCCAGN

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GATKATTCCA----
TNNNATGATTTCNNCNN

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GATKATTCCA--
--RCATTCCWGG

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GATKATTCCA
AATTATT---

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GATKATTCCA-----
TTCTAGAANNTTCCAGAANN

PH0022.1_Dlx3/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GATKATTCCA---
TCGCGATAATTACCGAC

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GATKATTCCA----
GNNNATTAATCCCTNCN

MA0152.1_NFATC2/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GATKATTCCA
---TTTTCCA

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GATKATTCCA----
GANNATTAATCCCTNNN

MA0081.1_SPIB/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GATKATTCCA--
-----TTCCTCT