Information for 14-GAGCATCKGACA (Motif 7)


Reverse Opposite:

p-value:1e-6
log p-value:-1.499e+01
Information Content per bp:1.831
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif23.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets179.7 +/- 111.2bp
Average Position of motif in Background180.2 +/- 120.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)4.88
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGCATCKGACA
-ANCAGCTG---

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCKGACA--
NNNNAGCAGCTGCTGAN

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCKGACA--
CCNNACCATCTGGCCTN

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGCATCKGACA-
-NVCAGCTGBBNN

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGCATCKGACA-
-GCCAGCTGBTNB

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGCATCKGACA
CGACCATCTGTT-

MA0522.1_Tcf3/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGCATCKGACA
NTGCAGCTGTG-

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATCKGACA
CGGAGC--------

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGCATCKGACA
NNAGCAGCTGCT-

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGCATCKGACA
CAGCC-------