Information for 6-CGGAAAAM (Motif 8)


Reverse Opposite:

p-value:1e-6
log p-value:-1.466e+01
Information Content per bp:1.677
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif4.07%
Number of Background Sequences with motif919.3
Percentage of Background Sequences with motif1.90%
Average Position of motif in Targets212.7 +/- 106.2bp
Average Position of motif in Background190.0 +/- 113.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CGGAAAAM
TGGAAAA-

PB0075.1_Sp100_1/Jaspar

Match Rank:2
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------CGGAAAAM
ATTTTACGGAAAAT

MA0028.1_ELK1/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CGGAAAAM
GAGCCGGAAG--

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CGGAAAAM
RCCGGAARYN

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CGGAAAAM--
TACTGGAAAAAAAA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGGAAAAM
AATGGAAAAT

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGGAAAAM
DCCGGAARYN

PB0186.1_Tcf3_2/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CGGAAAAM-----
AGCCGAAAAAAAAAT

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGGAAAAM
RCCGGAAGTD

MF0001.1_ETS_class/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGGAAAAM
ACCGGAAG--