Information for 3-TTTATGAT (Motif 14)


Reverse Opposite:

p-value:1e-8
log p-value:-1.963e+01
Information Content per bp:1.793
Number of Target Sequences with motif1103.0
Percentage of Target Sequences with motif24.50%
Number of Background Sequences with motif9519.2
Percentage of Background Sequences with motif20.90%
Average Position of motif in Targets271.0 +/- 160.9bp
Average Position of motif in Background276.1 +/- 159.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TTTATGAT
NTTTTATGAC

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGAT----
ANNTTTTACGACNTNN

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGAT----
NAATTTTACGAGNTNN

MA0465.1_CDX2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGAT--
TTTTATGGCTN

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGAT----
NNGTTTTACGACTTTA

PH0017.1_Cux1_2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTTATGAT-----
TAATGATGATCACTA

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGAT----
NNNTTTTACGACNTTN

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGAT----
NNAATTAATGACCNNN

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATGAT----
GNNNTTTTACGACCTNA

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TTTATGAT----
TATAATTATAATATTC