Information for 5-GGTTTTWT (Motif 16)


Reverse Opposite:

p-value:1e-8
log p-value:-1.864e+01
Information Content per bp:1.853
Number of Target Sequences with motif742.0
Percentage of Target Sequences with motif16.48%
Number of Background Sequences with motif6155.1
Percentage of Background Sequences with motif13.51%
Average Position of motif in Targets282.2 +/- 154.8bp
Average Position of motif in Background276.3 +/- 160.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGTTTTWT------
NNANTTTTATTGGNNN

MA0151.1_ARID3A/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GGTTTTWT
--TTTAAT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GGTTTTWT----
--TTTTATTRGN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGTTTTWT
NGGGATTA--

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGTTTTWT----
--TTTAATTGCN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGTTTTWT---
-NTTTTATGAC

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGTTTTWT----
TGAAGGGATTAATCATC

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGTTTTWT----
AGAGGGGATTAATTTAT

PB0182.1_Srf_2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GGTTTTWT------
NNNNTTTTTTTTTNAAC

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGTTTTWT----
TGTAGGGATTAATTGTC