Information for 7-CTCGTGAT (Motif 18)


Reverse Opposite:

p-value:1e-7
log p-value:-1.666e+01
Information Content per bp:1.915
Number of Target Sequences with motif343.0
Percentage of Target Sequences with motif7.62%
Number of Background Sequences with motif2593.1
Percentage of Background Sequences with motif5.69%
Average Position of motif in Targets285.9 +/- 158.1bp
Average Position of motif in Background281.6 +/- 160.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0108.1_Atf1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CTCGTGAT--
NTTATTCGTCATNC

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTCGTGAT
ACCACGTGAC

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CTCGTGAT----
GCAACCTCATTATNNNN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CTCGTGAT----
NNNACCTCATTATCNTN

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTCGTGAT----
AAACCTCGTAAAATTT

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCGTGAT-
TCACGTGACC

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCGTGAT
CACGTGNT

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:8
Score:0.62
Offset:-8
Orientation:reverse strand
Alignment:--------CTCGTGAT------
NTNNTNGTCACGTGACNNNTNC

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTCGTGAT
RTCATGTGAC

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTCGTGAT-
---GTCATN