Information for 3-ATCATCGAATGG (Motif 2)


Reverse Opposite:

p-value:1e-29
log p-value:-6.782e+01
Information Content per bp:1.593
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets291.0 +/- 145.4bp
Average Position of motif in Background261.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)2.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATCATCGAATGG-
ACTATGAATGAATGAT

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATCATCGAATGG
NANTTCATTGAATTA

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATCATCGAATGG---
NNNTATTGAATTGNNN

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------ATCATCGAATGG
AAGGCGAAATCATCGCA---

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ATCATCGAATGG----
TATTATGGGATGGATAA

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATCATCGAATGG---
NANAGATCAAAGGGNNN

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATCATCGAATGG---
NNNAGATCAAAGGANNN

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---ATCATCGAATGG
ATTTGCATACAATGG

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ATCATCGAATGG
GTCATN------

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:ATCATCGAATGG-----
-----TGATTGGCTANN